Bioimage analysis toolbox
ColonyArea
ImageJ-plugin that is optimized to perform standard analysis of colony formation assays conducted in 6- to 24-well dishes.
Filopodia counter
A Fiji/ImageJ plugin that is able to perform standard analysis of colony formation assays in 6- to 24-well plates. It determines the percentage of area covered by crystal violet stained cell colonies and uses staining intensity to determine cell density.
Split and Merge
Tagged image file format (TIFF) images acquired from fluorescent microscopes often contain multi-dimensional and multi-channel data. It is often required to split or rearrange the dimensionality and channels containing fluorescent intensity data. Split and Merge is a Fiji/ImageJ macro that eases this process by allowing a single-file multidimensional TIFF stack to be split into separate files, or by merging together separate files into a single TIFF stack.